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Species Name
NCBI Taxon Id
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08-1736 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
2007-60-3289-1 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
3114 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
9150 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
AKU_12601 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
ATCC 30255) Bacteria
------Proteobacteria
----------Betaproteobacteria
--------------Kinetoplastibacterium.
Archaea.
Archaea
------Crenarchaeota
----------Thermoprotei
--------------Acidilobales
------------------Acidilobaceae
----------------------Acidilobus.
------------------Caldisphaeraceae
----------------------Caldisphaera.
--------------Desulfurococcales
------------------Desulfurococcaceae
----------------------Aeropyrum.
----------------------Desulfurococcus.
----------------------Ignicoccus.
----------------------Ignisphaera.
----------------------Staphylothermus.
----------------------Thermogladius.
----------------------Thermosphaera.
------------------Pyrodictiaceae
----------------------Hyperthermus.
----------------------Pyrolobus.
--------------Fervidicoccales
------------------Fervidicoccaceae
----------------------Fervidicoccus.
--------------Sulfolobales
------------------Sulfolobaceae
----------------------Acidianus.
----------------------Metallosphaera.
----------------------Sulfolobus.
--------------Thermoproteales
------------------Thermofilaceae
----------------------Thermofilum.
------------------Thermoproteaceae
----------------------Caldivirga.
----------------------Pyrobaculum.
----------------------Thermoproteus.
----------------------Vulcanisaeta.
------Euryarchaeota
----------Aciduliprofundum.
----------Archaeoglobi
--------------Archaeoglobales
------------------Archaeoglobaceae
----------------------Archaeoglobus.
----------------------Ferroglobus.
----------Candidatus Methanomethylophilus.
----------Halobacteria
--------------Halobacteriales
------------------Halobacteriaceae
----------------------Halalkalicoccus.
----------------------Haloarcula.
----------------------Halobacterium.
----------------------Haloferax.
----------------------Halogeometricum.
----------------------Halomicrobium.
----------------------Halopiger.
----------------------Haloquadratum.
----------------------Halorhabdus.
----------------------Halorubrum.
----------------------Haloterrigena.
----------------------Halovivax.
----------------------Natrialba.
----------------------Natrinema.
----------------------Natronobacterium.
----------------------Natronococcus.
----------------------Natronomonas.
----------------------Salinarchaeum.
----------Methanobacteria
--------------Methanobacteriales
------------------Methanobacteriaceae
----------------------Methanobacterium.
----------------------Methanobrevibacter.
----------------------Methanosphaera.
----------------------Methanothermobacter.
------------------Methanothermaceae
----------------------Methanothermus.
----------Methanococci
--------------Methanococcales
------------------Methanocaldococcaceae
----------------------Methanocaldococcus.
----------------------Methanotorris.
------------------Methanococcaceae
----------------------Methanococcus.
----------------------Methanothermococcus.
----------Methanomicrobia
--------------Methanocellales
------------------Methanocellaceae
----------------------Methanocella.
--------------Methanomicrobiales
------------------Genera incertae sedis
----------------------Methanoregula.
----------------------Methanosphaerula.
------------------Methanocorpusculaceae
----------------------Methanocorpusculum.
------------------Methanomicrobiaceae
----------------------Methanoculleus.
----------------------Methanoplanus.
------------------Methanoregulaceae
----------------------Methanoregula.
------------------Methanospirillaceae
----------------------Methanospirillum.
--------------Methanosarcinales
------------------Methanosaetaceae
----------------------Methanosaeta.
------------------Methanosarcinaceae
----------------------Methanococcoides.
----------------------Methanohalobium.
----------------------Methanohalophilus.
----------------------Methanolobus.
----------------------Methanomethylovorans.
----------------------Methanosalsum.
----------------------Methanosarcina.
--------------unclassified Methanomicrobia
------------------Methanomassiliicoccus.
----------Methanopyri
--------------Methanopyrales
------------------Methanopyraceae
----------------------Methanopyrus.
----------Thermococci
--------------Thermococcales
------------------Thermococcaceae
----------------------Pyrococcus.
----------------------Thermococcus.
----------Thermoplasmata
--------------Thermoplasmatales.
--------------Thermoplasmatales
------------------Ferroplasmaceae
----------------------Ferroplasma.
------------------Picrophilaceae
----------------------Picrophilus.
------------------Thermoplasmataceae
----------------------Thermoplasma.
----------environmental samples.
------Korarchaeota
----------Candidatus Korarchaeum.
------Nanoarchaeota
----------Nanoarchaeum.
------Thaumarchaeota
----------Cenarchaeales
--------------Cenarchaeaceae
------------------Cenarchaeum.
----------Nitrosopumilales
--------------Nitrosopumilaceae
------------------Candidatus Nitrosoarchaeum.
------------------Nitrosopumilus.
----------Nitrososphaerales
--------------Nitrososphaeraceae
------------------Nitrososphaera.
----------marine archaeal group 1
--------------Nitrosopumilales
------------------Nitrosopumilaceae
----------------------Nitrosopumilus.
----------unclassified Thaumarchaeota
--------------Candidatus Caldiarchaeum.
Bacteria.
Bacteria
------Acidobacteria
----------Acidobacteriales
--------------Acidobacteriaceae
------------------Acidobacterium.
------------------Granulicella.
------------------Terriglobus.
----------Candidatus Chloracidobacterium.
----------Candidatus Koribacter.
----------Solibacteres
--------------Solibacterales
------------------Solibacteraceae
----------------------Candidatus Solibacter.
------Actinobacteria
----------Acidimicrobidae
--------------Acidimicrobiales
------------------Acidimicrobineae
----------------------Acidimicrobiaceae
--------------------------Acidimicrobium.
--------------------------Ilumatobacter.
----------Actinobacteridae
--------------Actinomycetales
------------------Actinomycineae
----------------------Actinomycetaceae
--------------------------Arcanobacterium.
--------------------------Mobiluncus/Falcivibrio group
------------------------------Mobiluncus.
------------------Catenulisporineae
----------------------Catenulisporaceae
--------------------------Catenulispora.
------------------Corynebacterineae
----------------------Corynebacteriaceae
--------------------------Corynebacterium.
----------------------Gordoniaceae
--------------------------Gordonia.
----------------------Mycobacteriaceae
--------------------------Amycolicicoccus.
--------------------------Mycobacterium.
--------------------------Mycobacterium
------------------------------Mycobacterium abscessus.
------------------------------Mycobacterium avium complex (MAC).
------------------------------Mycobacterium tuberculosis complex.
----------------------Nocardiaceae
--------------------------Nocardia.
--------------------------Rhodococcus.
----------------------Segniliparaceae
--------------------------Segniliparus.
----------------------Tsukamurellaceae
--------------------------Tsukamurella.
------------------Frankineae
----------------------Acidothermaceae
--------------------------Acidothermus.
----------------------Frankiaceae
--------------------------Frankia.
----------------------Geodermatophilaceae
--------------------------Blastococcus.
--------------------------Geodermatophilus.
--------------------------Modestobacter.
----------------------Nakamurellaceae
--------------------------Nakamurella.
------------------Glycomycineae
----------------------Glycomycetaceae
--------------------------Stackebrandtia.
------------------Kineosporiineae
----------------------Kineosporiaceae
--------------------------Kineococcus.
------------------Micrococcineae
----------------------Beutenbergiaceae
--------------------------Beutenbergia.
----------------------Cellulomonadaceae
--------------------------Cellulomonas.
----------------------Dermabacteraceae
--------------------------Brachybacterium.
----------------------Dermacoccaceae
--------------------------Kytococcus.
----------------------Intrasporangiaceae
--------------------------Intrasporangium.
----------------------Jonesiaceae
--------------------------Jonesia.
----------------------Microbacteriaceae
--------------------------Clavibacter.
--------------------------Leifsonia.
--------------------------Microbacterium.
----------------------Micrococcaceae
--------------------------Arthrobacter.
--------------------------Kocuria.
--------------------------Micrococcus.
--------------------------Renibacterium.
--------------------------Rothia.
----------------------Promicromonosporaceae
--------------------------Isoptericola.
--------------------------Xylanimonas.
----------------------Sanguibacteraceae
--------------------------Sanguibacter.
----------------------Tropheryma.
------------------Micromonosporineae
----------------------Micromonosporaceae
--------------------------Actinoplanes.
--------------------------Micromonospora.
--------------------------Salinispora.
--------------------------Verrucosispora.
------------------Propionibacterineae
----------------------Nocardioidaceae
--------------------------Kribbella.
--------------------------Nocardioides.
----------------------Propionibacteriaceae
--------------------------Microlunatus.
--------------------------Propionibacterium.
------------------Pseudonocardineae
----------------------Pseudonocardiaceae
--------------------------Actinosynnema.
--------------------------Amycolatopsis.
--------------------------Pseudonocardia.
--------------------------Saccharomonospora.
--------------------------Saccharopolyspora.
--------------------------Saccharothrix.
--------------------------Thermobispora.
------------------Streptomycineae
----------------------Streptomycetaceae
--------------------------Kitasatospora.
--------------------------Streptomyces.
------------------Streptosporangineae
----------------------Nocardiopsaceae
--------------------------Nocardiopsis.
--------------------------Thermobifida.
----------------------Streptosporangiaceae
--------------------------Streptosporangium.
----------------------Thermomonosporaceae
--------------------------Thermomonospora.
--------------Bifidobacteriales
------------------Bifidobacteriaceae
----------------------Bifidobacterium.
----------------------Gardnerella.
----------Coriobacteridae
--------------Coriobacteriales
------------------Coriobacterineae
----------------------Coriobacteriaceae
--------------------------Adlercreutzia.
--------------------------Atopobium.
--------------------------Coriobacterium.
--------------------------Cryptobacterium.
--------------------------Eggerthella.
--------------------------Gordonibacter.
--------------------------Olsenella.
--------------------------Slackia.
----------Rubrobacteridae
--------------Rubrobacterales
------------------Rubrobacterineae
----------------------Rubrobacteraceae
--------------------------Rubrobacter.
--------------Solirubrobacterales
------------------Conexibacteraceae
----------------------Conexibacter.
------Aquificae
----------Aquificales
--------------Aquificaceae
------------------Aquifex.
------------------Hydrogenobacter.
------------------Hydrogenobaculum.
------------------Thermocrinis.
--------------Desulfurobacteriaceae
------------------Desulfurobacterium.
------------------Thermovibrio.
--------------Hydrogenothermaceae
------------------Persephonella.
------------------Sulfurihydrogenibium.
------Armatimonadetes
----------Chthonomonadetes
--------------Chthonomonadales
------------------Chthonomonadaceae
----------------------Chthonomonas.
------Bacteroidetes
----------Bacteroidetes Order II. Incertae sedis
--------------Rhodothermaceae
------------------Rhodothermus.
------------------Salinibacter.
----------Bacteroidia
--------------Bacteroidales
------------------Bacteroidaceae
----------------------Bacteroides.
------------------Candidatus Azobacteroides.
------------------Porphyromonadaceae
----------------------Odoribacter.
----------------------Paludibacter.
----------------------Parabacteroides.
----------------------Porphyromonas.
----------------------Tannerella.
------------------Prevotellaceae
----------------------Prevotella.
------------------Rikenellaceae
----------------------Alistipes.
----------Candidatus Amoebophilus.
----------Candidatus Cardinium.
----------Cytophagia
--------------Cytophagales
------------------Cyclobacteriaceae
----------------------Belliella.
----------------------Cyclobacterium.
----------------------Echinicola.
------------------Cytophagaceae
----------------------Cytophaga.
----------------------Dyadobacter.
----------------------Emticicia.
----------------------Fibrella.
----------------------Flexibacter.
----------------------Leadbetterella.
----------------------Runella.
----------------------Spirosoma.
------------------Flammeovirgaceae
----------------------Marivirga.
----------Flavobacteriia
--------------Flavobacteriales
------------------Blattabacteriaceae
----------------------Blattabacterium.
------------------Candidatus Sulcia.
------------------Candidatus Uzinura.
------------------Cryomorphaceae
----------------------Fluviicola.
----------------------Owenweeksia.
------------------Flavobacteriaceae.
------------------Flavobacteriaceae
----------------------Aequorivita.
----------------------Capnocytophaga.
----------------------Cellulophaga.
----------------------Croceibacter.
----------------------Flavobacterium.
----------------------Gramella.
----------------------Krokinobacter.
----------------------Lacinutrix.
----------------------Maribacter.
----------------------Muricauda.
----------------------Nonlabens.
----------------------Ornithobacterium.
----------------------Polaribacter.
----------------------Psychroflexus.
----------------------Riemerella.
----------------------Robiginitalea.
----------------------Weeksella.
----------------------Zobellia.
----------------------Zunongwangia.
----------Sphingobacteriia
--------------Sphingobacteriales
------------------Chitinophagaceae
----------------------Chitinophaga.
----------------------Niastella.
------------------Saprospiraceae
----------------------Haliscomenobacter.
----------------------Saprospira.
------------------Sphingobacteriaceae
----------------------Pedobacter.
----------------------Solitalea.
----------------------Sphingobacterium.
------Caldiserica
----------Caldisericia
--------------Caldisericales
------------------Caldisericaceae
----------------------Caldisericum.
------Candidatus Saccharibacteria.
------Candidatus Saccharibacteria
----------Candidatus Saccharimonas.
------Chlamydiae
----------Chlamydiales
--------------Chlamydiaceae
------------------Chlamydia/Chlamydophila group
----------------------Chlamydia.
----------------------Chlamydophila.
--------------Parachlamydiaceae
------------------Candidatus Protochlamydia.
------------------Parachlamydia.
--------------Simkaniaceae
------------------Simkania.
--------------Waddliaceae
------------------Waddlia.
------Chlorobi
----------Chlorobia
--------------Chlorobiales
------------------Chlorobiaceae
----------------------Chlorobaculum.
----------------------Chlorobium/Pelodictyon group
--------------------------Chlorobium.
--------------------------Pelodictyon.
----------------------Chloroherpeton.
----------------------Prosthecochloris.
------Chloroflexi
----------Anaerolineae
--------------Anaerolineales
------------------Anaerolineaceae
----------------------Anaerolinea.
----------Caldilineae
--------------Caldilineales
------------------Caldilineaceae
----------------------Caldilinea.
----------Chloroflexales
--------------Chloroflexaceae
------------------Chloroflexus.
------------------Roseiflexus.
----------Dehalococcoidetes
--------------Dehalococcoides.
--------------Dehalogenimonas.
----------Dehalococcoidia
--------------Dehalococcoidales
------------------Dehalococcoidaceae
----------------------Dehalococcoides.
----------Herpetosiphonales
--------------Herpetosiphonaceae
------------------Herpetosiphon.
----------Sphaerobacteridae
--------------Sphaerobacterales
------------------Sphaerobacterineae
----------------------Sphaerobacteraceae
--------------------------Sphaerobacter.
----------Thermomicrobiales
--------------Thermomicrobiaceae
------------------Thermomicrobium.
------Chrysiogenetes
----------Chrysiogenales
--------------Chrysiogenaceae
------------------Desulfurispirillum.
------Cyanobacteria
----------Chroococcales.
----------Chroococcales
--------------Acaryochloris.
--------------Cyanothece.
--------------Microcystis.
--------------Synechococcus.
--------------Synechocystis.
--------------Thermosynechococcus.
----------Gloeobacteria
--------------Gloeobacterales
------------------Gloeobacter.
----------Nostocales
--------------Nostocaceae
------------------Anabaena.
------------------Cylindrospermum.
------------------Nostoc.
------------------Trichormus.
--------------Rivulariaceae
------------------Calothrix.
------------------Rivularia.
----------Oscillatoriales
--------------Trichodesmium.
----------Oscillatoriophycideae
--------------Chroococcales
------------------Chamaesiphon.
------------------Cyanobacterium.
------------------Cyanobium.
------------------Dactylococcopsis.
------------------Gloeocapsa.
------------------Halothece cluster
----------------------Halothece.
------------------Synechococcus.
------------------Synechocystis.
------------------Thermosynechococcus.
--------------Oscillatoriales
------------------Arthrospira.
------------------Crinalium.
------------------Geitlerinema.
------------------Leptolyngbya.
------------------Microcoleus.
------------------Oscillatoria.
------------------Pseudanabaena.
----------Pleurocapsales
--------------Chroococcidiopsis.
--------------Pleurocapsa.
--------------Stanieria.
----------Prochlorales
--------------Prochlorococcaceae
------------------Prochlorococcus.
------Deferribacteres
----------Deferribacterales
--------------Deferribacteraceae.
--------------Deferribacteraceae
------------------Deferribacter.
------------------Denitrovibrio.
------------------Flexistipes.
------Deinococcus-Thermus
----------Deinococci
--------------Deinococcales
------------------Deinococcaceae
----------------------Deinococcus.
------------------Trueperaceae
----------------------Truepera.
--------------Thermales
------------------Thermaceae
----------------------Marinithermus.
----------------------Meiothermus.
----------------------Oceanithermus.
----------------------Thermus.
------Dictyoglomi
----------Dictyoglomales
--------------Dictyoglomaceae
------------------Dictyoglomus.
------Elusimicrobia
----------Elusimicrobia (class)
--------------Elusimicrobiales
------------------Elusimicrobiaceae
----------------------Elusimicrobium.
----------environmental samples.
------Fibrobacteres
----------Fibrobacterales
--------------Fibrobacteraceae
------------------Fibrobacter.
------Firmicutes
----------Bacillales
--------------Alicyclobacillaceae
------------------Alicyclobacillus.
------------------Kyrpidia.
--------------Bacillaceae
------------------Anoxybacillus.
------------------Bacillus.
------------------Bacillus
----------------------Bacillus cereus group.
------------------Geobacillus.
------------------Halobacillus.
------------------Lysinibacillus.
------------------Oceanobacillus.
--------------Bacillales Family XII. Incertae Sedis
------------------Exiguobacterium.
--------------Listeriaceae
------------------Listeria.
--------------Macrococcus.
--------------Paenibacillaceae
------------------Brevibacillus.
------------------Paenibacillus.
--------------Staphylococcus.
----------Bacilli
--------------Bacillales
------------------Bacillaceae
----------------------Amphibacillus.
----------------------Bacillus.
----------------------Bacillus
--------------------------Bacillus cereus group.
----------------------Geobacillus.
------------------Bacillales Family XII. Incertae Sedis
----------------------Exiguobacterium.
------------------Listeriaceae
----------------------Listeria.
------------------Paenibacillaceae
----------------------Paenibacillus.
----------------------Thermobacillus.
------------------Planococcaceae
----------------------Solibacillus.
------------------Staphylococcus.
--------------Lactobacillales
------------------Carnobacteriaceae
----------------------Carnobacterium.
------------------Enterococcaceae
----------------------Enterococcus.
------------------Lactobacillaceae
----------------------Lactobacillus.
----------------------Pediococcus.
------------------Leuconostoc.
------------------Streptococcaceae
----------------------Lactococcus.
----------------------Streptococcus.
----------------------Streptococcus
--------------------------Streptococcus anginosus group.
----------Clostridia
--------------Clostridiales.
--------------Clostridiales
------------------Clostridiaceae
----------------------Alkaliphilus.
----------------------Candidatus Arthromitus.
----------------------Clostridium.
------------------Clostridiales Family XI. Incertae Sedis
----------------------Anaerococcus.
----------------------Finegoldia.
------------------Clostridiales Family XVII. Incertae Sedis
----------------------Sulfobacillus.
----------------------Thermaerobacter.
------------------Clostridiales Family XVIII. Incertae Sedis
----------------------Symbiobacterium.
------------------Eubacteriaceae
----------------------Acetobacterium.
----------------------Eubacterium.
------------------Heliobacteriaceae
----------------------Heliobacterium.
------------------Lachnospiraceae
----------------------Butyrivibrio.
----------------------Cellulosilyticum.
----------------------Coprococcus.
----------------------Roseburia.
------------------Oscillospiraceae
----------------------Oscillibacter.
------------------Peptococcaceae
----------------------Candidatus Desulforudis.
----------------------Dehalobacter.
----------------------Desulfitobacterium.
----------------------Desulfosporosinus.
----------------------Desulfotomaculum.
----------------------Pelotomaculum.
----------------------Syntrophobotulus.
----------------------Thermincola.
------------------Peptostreptococcaceae.
------------------Peptostreptococcaceae
----------------------Filifactor.
------------------Ruminococcaceae
----------------------Ethanoligenens.
----------------------Faecalibacterium.
----------------------Ruminococcus.
----------------------unclassified Ruminococcaceae.
------------------Syntrophomonadaceae
----------------------Syntrophomonas.
----------------------Syntrophothermus.
--------------Halanaerobiales
------------------Halanaerobiaceae
----------------------Halanaerobium.
----------------------Halothermothrix.
------------------Halobacteroidaceae
----------------------Acetohalobium.
----------------------Halobacteroides.
--------------Natranaerobiales
------------------Natranaerobiaceae
----------------------Natranaerobius.
--------------Thermoanaerobacterales
------------------Thermoanaerobacteraceae
----------------------Caldanaerobacter.
----------------------Carboxydothermus.
----------------------Moorella group
--------------------------Ammonifex.
--------------------------Moorella.
----------------------Tepidanaerobacter.
----------------------Thermacetogenium.
----------------------Thermoanaerobacter.
------------------Thermoanaerobacterales Family III. Incertae Sedis
----------------------Caldicellulosiruptor.
----------------------Thermoanaerobacterium.
----------------------Thermosediminibacter.
------------------Thermoanaerobacterales Family IV. Incertae Sedis
----------------------Mahella.
------------------Thermodesulfobiaceae
----------------------Coprothermobacter.
----------------------Thermodesulfobium.
----------Erysipelotrichi
--------------Erysipelotrichales
------------------Erysipelotrichaceae
----------------------Erysipelothrix.
----------Erysipelotrichia
--------------Erysipelotrichales
------------------Erysipelotrichaceae.
------------------Erysipelotrichaceae
----------------------Erysipelothrix.
----------Lactobacillales
--------------Aerococcaceae
------------------Aerococcus.
--------------Carnobacteriaceae
------------------Carnobacterium.
--------------Enterococcaceae
------------------Enterococcus.
------------------Melissococcus.
------------------Tetragenococcus.
--------------Lactobacillaceae
------------------Lactobacillus.
------------------Pediococcus.
--------------Leuconostoc.
--------------Oenococcus.
--------------Streptococcaceae
------------------Lactococcus.
------------------Streptococcus.
------------------Streptococcus
----------------------Streptococcus anginosus group.
--------------Weissella.
----------Negativicutes
--------------Selenomonadales
------------------Acidaminococcaceae
----------------------Acidaminococcus.
------------------Veillonellaceae
----------------------Megamonas.
----------------------Megasphaera.
----------------------Selenomonas.
----------------------Veillonella.
------Fusobacteria
----------Fusobacteriales
--------------Fusobacteriaceae
------------------Fusobacterium.
------------------Ilyobacter.
--------------Leptotrichiaceae
------------------Leptotrichia.
------------------Sebaldella.
------------------Streptobacillus.
------Gemmatimonadetes
----------Gemmatimonadales
--------------Gemmatimonadaceae
------------------Gemmatimonas.
------Ignavibacteriae
----------Ignavibacteria
--------------Ignavibacteriales
------------------Ignavibacteriaceae
----------------------Ignavibacterium.
------------------Melioribacteraceae
----------------------Melioribacter.
------Nitrospirae
----------Nitrospirales
--------------Nitrospiraceae
------------------Leptospirillum.
------------------Nitrospira.
------------------Thermodesulfovibrio.
------Planctomycetes
----------Phycisphaerae
--------------Phycisphaerales
------------------Phycisphaeraceae
----------------------Phycisphaera.
----------Planctomycetia
--------------Planctomycetales
------------------Planctomycetaceae
----------------------Isosphaera.
----------------------Pirellula.
----------------------Planctomyces.
----------------------Rhodopirellula.
----------------------Singulisphaera.
------Proteobacteria
----------Alphaproteobacteria
--------------Caulobacterales
------------------Caulobacteraceae
----------------------Asticcacaulis.
----------------------Brevundimonas.
----------------------Caulobacter.
----------------------Phenylobacterium.
--------------Micavibrio.
--------------Parvularculales
------------------Parvularculaceae
----------------------Parvularcula.
--------------Polymorphum.
--------------Rhizobiales
------------------Bartonellaceae
----------------------Bartonella.
------------------Beijerinckiaceae
----------------------Beijerinckia.
----------------------Methylocella.
------------------Bradyrhizobiaceae
----------------------Bradyrhizobium.
----------------------Nitrobacter.
----------------------Oligotropha.
----------------------Rhodopseudomonas.
------------------Brucellaceae
----------------------Brucella.
----------------------Ochrobactrum.
------------------Candidatus Hodgkinia.
------------------Hyphomicrobiaceae
----------------------Hyphomicrobium.
----------------------Pelagibacterium.
----------------------Rhodomicrobium.
------------------Methylobacteriaceae
----------------------Methylobacterium.
------------------Methylocystaceae
----------------------Methylocystis.
------------------Phyllobacteriaceae
----------------------Chelativorans.
----------------------Mesorhizobium.
----------------------Parvibaculum.
------------------Rhizobiaceae
----------------------Candidatus Liberibacter.
----------------------Rhizobium/Agrobacterium group
--------------------------Agrobacterium.
--------------------------Rhizobium.
----------------------Sinorhizobium/Ensifer group
--------------------------Sinorhizobium.
------------------Xanthobacteraceae
----------------------Azorhizobium.
----------------------Starkeya.
----------------------Xanthobacter.
--------------Rhodobacterales
------------------Hyphomonadaceae
----------------------Hirschia.
----------------------Hyphomonas.
----------------------Maricaulis.
------------------Rhodobacteraceae
----------------------Dinoroseobacter.
----------------------Jannaschia.
----------------------Ketogulonicigenium.
----------------------Leisingera.
----------------------Octadecabacter.
----------------------Paracoccus.
----------------------Phaeobacter.
----------------------Pseudovibrio.
----------------------Rhodobacter.
----------------------Roseobacter.
----------------------Ruegeria.
--------------Rhodospirillales
------------------Acetobacteraceae
----------------------Acetobacter.
----------------------Acidiphilium.
----------------------Gluconacetobacter.
----------------------Gluconobacter.
----------------------Granulibacter.
------------------Rhodospirillaceae
----------------------Azospirillum.
----------------------Candidatus Endolissoclinum.
----------------------Magnetospirillum.
----------------------Rhodospirillum.
----------------------Tistrella.
--------------Rickettsiales
------------------Anaplasmataceae
----------------------Anaplasma.
----------------------Anaplasma
--------------------------phagocytophilum group.
----------------------Ehrlichia.
----------------------Neorickettsia.
----------------------Wolbachieae
--------------------------Wolbachia.
------------------Candidatus Midichloria.
------------------Rickettsiaceae
----------------------Rickettsieae
--------------------------Orientia.
--------------------------Rickettsia
------------------------------belli group.
------------------------------spotted fever group.
------------------------------typhus group.
------------------SAR11 cluster
----------------------Candidatus Pelagibacter.
--------------SAR11 cluster.
--------------SAR11 cluster
------------------Candidatus Pelagibacter.
--------------SAR116 cluster
------------------Candidatus Puniceispirillum.
--------------Sphingomonadales
------------------Erythrobacteraceae
----------------------Erythrobacter.
------------------Sphingomonadaceae
----------------------Novosphingobium.
----------------------Sphingobium.
----------------------Sphingomonas.
----------------------Sphingopyxis.
----------------------Zymomonas.
----------Betaproteobacteria.
----------Betaproteobacteria
--------------Burkholderiales
------------------Alcaligenaceae.
------------------Alcaligenaceae
----------------------Achromobacter.
----------------------Bordetella.
----------------------Pusillimonas.
----------------------Taylorella.
------------------Burkholderiaceae
----------------------Burkholderia.
----------------------Burkholderia
--------------------------Burkholderia cepacia complex.
--------------------------pseudomallei group.
----------------------Cupriavidus.
----------------------Pandoraea.
----------------------Polynucleobacter.
----------------------Ralstonia.
------------------Comamonadaceae.
------------------Comamonadaceae
----------------------Acidovorax.
----------------------Albidiferax.
----------------------Alicycliphilus.
----------------------Comamonas.
----------------------Delftia.
----------------------Polaromonas.
----------------------Ramlibacter.
----------------------Variovorax.
----------------------Verminephrobacter.
------------------Leptothrix.
------------------Methylibium.
------------------Oxalobacteraceae
----------------------Candidatus Zinderia.
----------------------Collimonas.
----------------------Herbaspirillum.
----------------------Herminiimonas.
----------------------Janthinobacterium.
------------------Rubrivivax.
------------------Thiomonas.
--------------Candidatus Accumulibacter.
--------------Candidatus Nasuia.
--------------Candidatus Profftella.
--------------Candidatus Tremblaya.
--------------Gallionellales
------------------Gallionellaceae
----------------------Gallionella.
----------------------Sideroxydans.
--------------Hydrogenophilales
------------------Hydrogenophilaceae
----------------------Sulfuricella.
----------------------Thiobacillus.
--------------Kinetoplastibacterium.
--------------Methylophilales
------------------Methylophilaceae
----------------------Methylobacillus.
----------------------Methylotenera.
----------------------Methylovorus.
--------------Neisseriales
------------------Neisseriaceae
----------------------Chromobacterium.
----------------------Laribacter.
----------------------Neisseria.
----------------------Pseudogulbenkiania.
--------------Nitrosomonadales
------------------Nitrosomonadaceae
----------------------Nitrosomonas.
----------------------Nitrosospira.
--------------Rhodocyclales
------------------Rhodocyclaceae
----------------------Aromatoleum.
----------------------Azoarcus.
----------------------Azospira.
----------------------Dechloromonas.
----------------------Thauera.
----------Deltaproteobacteria.
----------Deltaproteobacteria
--------------Bdellovibrionales
------------------Bacteriovoracaceae
----------------------Bacteriovorax.
------------------Bdellovibrionaceae
----------------------Bdellovibrio.
--------------Desulfarculales
------------------Desulfarculaceae
----------------------Desulfarculus.
--------------Desulfobacterales
------------------Desulfobacteraceae
----------------------Desulfatibacillum.
----------------------Desulfobacterium.
----------------------Desulfobacula.
----------------------Desulfococcus.
------------------Desulfobulbaceae
----------------------Desulfobulbus.
----------------------Desulfocapsa.
----------------------Desulfotalea.
----------------------Desulfurivibrio.
--------------Desulfovibrionales
------------------Desulfohalobiaceae
----------------------Desulfohalobium.
------------------Desulfomicrobiaceae
----------------------Desulfomicrobium.
------------------Desulfovibrionaceae
----------------------Desulfovibrio.
----------------------Lawsonia.
--------------Desulfurellales
------------------Desulfurellaceae
----------------------Hippea.
--------------Desulfuromonadales
------------------Geobacteraceae
----------------------Geobacter.
------------------Pelobacteraceae
----------------------Pelobacter.
--------------Myxococcales
------------------Cystobacterineae
----------------------Cystobacteraceae
--------------------------Stigmatella.
----------------------Myxococcaceae
--------------------------Anaeromyxobacter.
--------------------------Corallococcus.
--------------------------Myxococcus.
------------------Nannocystineae
----------------------Kofleriaceae
--------------------------Haliangium.
------------------Sorangiineae
----------------------Polyangiaceae
--------------------------Sorangium.
--------------Syntrophobacterales
------------------Syntrophaceae
----------------------Desulfobacca.
----------------------Desulfomonile.
----------------------Syntrophus.
------------------Syntrophobacteraceae
----------------------Syntrophobacter.
----------Epsilonproteobacteria
--------------Campylobacterales
------------------Campylobacteraceae
----------------------Arcobacter.
----------------------Campylobacter.
----------------------Sulfurospirillum.
------------------Helicobacteraceae
----------------------Helicobacter.
----------------------Sulfuricurvum.
----------------------Sulfuricurvum
--------------------------environmental samples.
----------------------Sulfurimonas.
----------------------Wolinella.
--------------Nautiliales
------------------Nautiliaceae
----------------------Nautilia.
--------------Nitratifractor.
--------------Nitratiruptor.
--------------Sulfurovum.
----------Gammaproteobacteria.
----------Gammaproteobacteria
--------------Acidithiobacillales
------------------Acidithiobacillaceae
----------------------Acidithiobacillus.
--------------Aeromonadales
------------------Aeromonadaceae
----------------------Aeromonas.
----------------------Oceanimonas.
----------------------Tolumonas.
--------------Alteromonadales
------------------Alteromonadaceae
----------------------Alteromonas.
----------------------Glaciecola.
----------------------Marinobacter.
----------------------Saccharophagus.
------------------Alteromonadales genera incertae sedis
----------------------Teredinibacter.
------------------Colwelliaceae
----------------------Colwellia.
------------------Ferrimonadaceae
----------------------Ferrimonas.
------------------Idiomarinaceae
----------------------Idiomarina.
------------------Pseudoalteromonadaceae
----------------------Pseudoalteromonas.
------------------Psychromonadaceae
----------------------Psychromonas.
------------------Shewanellaceae
----------------------Shewanella.
--------------Candidatus Baumannia.
--------------Candidatus Carsonella.
--------------Cardiobacteriales
------------------Cardiobacteriaceae
----------------------Dichelobacter.
--------------Chromatiales
------------------Chromatiaceae
----------------------Allochromatium.
----------------------Nitrosococcus.
----------------------Thiocystis.
----------------------Thioflavicoccus.
------------------Ectothiorhodospiraceae
----------------------Alkalilimnicola.
----------------------Halorhodospira.
----------------------Spiribacter.
----------------------Thioalkalivibrio.
------------------Halothiobacillaceae
----------------------Halothiobacillus.
--------------Enterobacteriales
------------------Enterobacteriaceae.
------------------Enterobacteriaceae
----------------------Buchnera.
----------------------Candidatus Moranella.
----------------------Candidatus Riesia.
----------------------Citrobacter.
----------------------Cronobacter.
----------------------Dickeya.
----------------------Edwardsiella.
----------------------Enterobacter.
----------------------Enterobacter
--------------------------Enterobacter cloacae complex.
----------------------Erwinia.
----------------------Escherichia.
----------------------Klebsiella.
----------------------Morganella.
----------------------Pantoea.
----------------------Pectobacterium.
----------------------Photorhabdus.
----------------------Proteus.
----------------------Providencia.
----------------------Rahnella.
----------------------Raoultella.
----------------------Salmonella.
----------------------Salmonella
--------------------------Salmonella enterica subsp. enterica serovar Agona.
--------------------------Salmonella enterica subsp. enterica serovar Dublin.
--------------------------Salmonella enterica subsp. enterica serovar Gallinarum.
--------------------------Salmonella enterica subsp. enterica serovar Heidelberg.
--------------------------Salmonella enterica subsp. enterica serovar Newport.
--------------------------Salmonella enterica subsp. enterica serovar Paratyphi B.
--------------------------Salmonella enterica subsp. enterica serovar Typhi.
--------------------------Salmonella enterica subsp. enterica serovar Typhimurium.
----------------------Serratia.
----------------------Serratia
--------------------------Serratia symbiotica.
----------------------Shigella.
----------------------Sodalis.
----------------------Wigglesworthia.
----------------------Xenorhabdus.
----------------------Yersinia.
----------------------ant endosymbionts
--------------------------Candidatus Blochmannia.
----------------------aphid secondary symbionts.
----------------------aphid secondary symbionts
--------------------------Candidatus Hamiltonella.
--------------Legionellales
------------------Coxiellaceae
----------------------Coxiella.
------------------Legionellaceae
----------------------Legionella.
--------------Methylococcales
------------------Methylococcaceae
----------------------Methylococcus.
----------------------Methylomicrobium.
----------------------Methylomonas.
--------------Oceanospirillales
------------------Alcanivoracaceae
----------------------Alcanivorax.
----------------------Kangiella.
------------------Hahellaceae
----------------------Hahella.
------------------Halomonadaceae
----------------------Chromohalobacter.
----------------------Halomonas.
----------------------Zymobacter group
--------------------------whitefly endosymbionts
------------------------------Candidatus Portiera.
------------------Marinomonas.
------------------Thalassolituus.
--------------Pasteurellales
------------------Pasteurellaceae
----------------------Actinobacillus.
----------------------Aggregatibacter.
----------------------Basfia.
----------------------Bibersteinia.
----------------------Gallibacterium.
----------------------Haemophilus.
----------------------Histophilus.
----------------------Mannheimia.
----------------------Pasteurella.
--------------Pseudomonadales
------------------Moraxellaceae
----------------------Acinetobacter.
----------------------Acinetobacter
--------------------------Acinetobacter calcoaceticus/baumannii complex.
----------------------Moraxella.
----------------------Psychrobacter.
------------------Pseudomonadaceae
----------------------Azotobacter.
----------------------Cellvibrio.
----------------------Pseudomonas.
----------------------Pseudomonas
--------------------------Pseudomonas savastanoi.
--------------------------Pseudomonas syringae.
--------------Simiduia.
--------------Thiotrichales
------------------Francisellaceae
----------------------Francisella.
------------------Piscirickettsiaceae
----------------------Cycloclasticus.
----------------------Methylophaga.
----------------------Thioalkalimicrobium.
----------------------Thiomicrospira.
--------------Vibrionales
------------------Vibrionaceae
----------------------Aliivibrio.
----------------------Listonella.
----------------------Photobacterium.
----------------------Vibrio.
--------------Xanthomonadales
------------------Xanthomonadaceae
----------------------Frateuria.
----------------------Pseudoxanthomonas.
----------------------Rhodanobacter.
----------------------Stenotrophomonas
--------------------------Stenotrophomonas maltophilia group.
----------------------Xanthomonas.
----------------------Xylella.
--------------sulfur-oxidizing symbionts.
----------Magnetococcus.
------Spirochaetes
----------Spirochaetales
--------------Brachyspiraceae
------------------Brachyspira.
--------------Leptospiraceae
------------------Leptospira.
------------------Turneriella.
--------------Sphaerochaeta.
--------------Spirochaetaceae
------------------Borrelia.
------------------Borrelia
----------------------Borrelia burgdorferi group.
------------------Spirochaeta.
------------------Treponema.
------Synergistetes.
------Synergistetes
----------Synergistia
--------------Synergistales
------------------Synergistaceae
----------------------Aminobacterium.
----------------------Anaerobaculum.
----------------------Thermanaerovibrio.
----------------------Thermovirga.
------Tenericutes
----------Mollicutes
--------------Acholeplasmatales
------------------Acholeplasmataceae
----------------------Acholeplasma.
----------------------Candidatus Phytoplasma
--------------------------16SrX (Apple proliferation group).
--------------------------16SrXII (Stolbur group).
--------------------------Candidatus Phytoplasma asteris.
--------------Entomoplasmatales
------------------Entomoplasmataceae
----------------------Mesoplasma.
------------------Spiroplasmataceae
----------------------Spiroplasma.
--------------Mycoplasmataceae
------------------Mycoplasma.
------------------Ureaplasma.
------Thermobaculum.
------Thermodesulfobacteria
----------Thermodesulfobacteriales
--------------Thermodesulfobacteriaceae
------------------Thermodesulfatator.
------------------Thermodesulfobacterium.
------Thermotogae
----------Thermotogales
--------------Thermotogaceae
------------------Fervidobacterium.
------------------Kosmotoga.
------------------Marinitoga.
------------------Mesotoga.
------------------Petrotoga.
------------------Thermosipho.
------------------Thermotoga.
------Verrucomicrobia
----------Opitutae
--------------Opitutales
------------------Opitutaceae
----------------------Opitutus.
--------------Puniceicoccales
------------------Puniceicoccaceae
----------------------Coraliomargarita.
----------Verrucomicrobiae
--------------Verrucomicrobiales
------------------Verrucomicrobiaceae
----------------------Akkermansia.
----------unclassified Verrucomicrobia
--------------Methylacidiphilales
------------------Methylacidiphilaceae
----------------------Methylacidiphilum.
------candidate division NC10
----------Candidatus Methylomirabilis.
------candidate division SR1.
------candidate division WWE1
----------Candidatus Cloacamonas.
------candidate division WWE3.
CFSAN000189 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
CFSAN001992 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
CFSAN002069 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
CVM19633 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
P125109 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella
--------------------------Salmonella enterica subsp. enterica serovar Enteritidis.
RKS4594 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella
--------------------------Salmonella enterica subsp. enterica serovar Paratyphi C.
RSK2980 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella
--------------------------------.
SC-B67 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella
--------------------------Salmonella enterica subsp. enterica serovar Choleraesuis.
T000240 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella
--------------------------Salmonella enterica subsp. enterica serovar Typhimurium.
USMARC-S3124.1 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
Viruses
------dsDNA viruses, no RNA stage
----------unclassified dsDNA phages.
------unclassified phages.
culicis) Bacteria
------Proteobacteria
----------Betaproteobacteria
--------------Kinetoplastibacterium.
morsitans (Yale colony) Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Wigglesworthia.
str. CDC1983-67 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
str. CFSAN001921 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella.
str. RKS5078 Bacteria
------Proteobacteria
----------Gammaproteobacteria
--------------Enterobacteriales
------------------Enterobacteriaceae
----------------------Salmonella
--------------------------Salmonella enterica subsp. enterica serovar Gallinarum/pullorum.
Organism
Lineage
Transcription Factor
misPredicted TF protein
Agrobacterium radiobacter K84
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
282
5
Agrobacterium radiobacter K84
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
306
7
Agrobacterium radiobacter K84 plasmid pAgK84
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
1
1
Agrobacterium radiobacter K84 plasmid pAtK84b
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
16
0
Agrobacterium radiobacter K84 plasmid pAtK84c
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
33
1
Agrobacterium sp. H13-3
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
181
1
Agrobacterium sp. H13-3
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
160
0
Agrobacterium sp. H13-3 plasmid pAspH13-3a
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
78
0
Agrobacterium tumefaciens str. C58
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
178
1
Agrobacterium tumefaciens str. C58
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
174
0
Agrobacterium tumefaciens str. C58 plasmid At
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
65
1
Agrobacterium tumefaciens str. C58 plasmid Ti
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
12
0
Agrobacterium vitis S4
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
108
3
Agrobacterium vitis S4
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
193
7
Agrobacterium vitis S4 plasmid pAtS4a
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
5
0
Agrobacterium vitis S4 plasmid pAtS4b
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
6
2
Agrobacterium vitis S4 plasmid pAtS4c
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
16
0
Agrobacterium vitis S4 plasmid pAtS4e
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
53
3
Agrobacterium vitis S4 plasmid pTiS4
Bacteria
/
Proteobacteria
/
Alphaproteobacteria
/
Rhizobiales
/
Rhizobiaceae
/
Rhizobium/Agrobacterium group
/
Agrobacterium.
/
18
0
Date : 10 November 2024, 20:23:10 - Licence
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Copyright/Mentions legales
