CEA/DSV/IBeB/SBVME/LEMiRE - P2TF Database - Version 2.9
 

P2TF (Predicted Prokaryotic Transcription Factors)

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Transcription factor, AbrB Transcription factor, AlpA Transcription factor, AraC Transcription factor, ArgR Transcription factor, ArsR Transcription factor, AsnC Transcription factor, BetR Transcription factor, Bhl Transcription factor, CitT Transcription factor, CodY Transcription factor, ComK Transcription factor, Crl Transcription factor, Crp Transcription factor, CsoR Transcription factor, CtsR Transcription factor, DeoR Transcription factor, DnaA Transcription factor, DtxR Transcription factor, Ecf Transcription factor, FaeA Transcription factor, FeoC Transcription factor, Fe_dep_repress Transcription factor, Fis Transcription factor, FlhC Transcription factor, FlhD Transcription factor, Fur Transcription factor, GntR Transcription factor, GutM Transcription factor, Hns Transcription factor, HrcA Transcription factor, HxlR Transcription factor, IclR Transcription factor, KorB Transcription factor, LacI Transcription factor, LexA Transcription factor, Lsr2 Transcription factor, LuxR Transcription factor, LysR Transcription factor, LytTR Transcription factor, MarR Transcription factor, MerR Transcription factor, MetJ Transcription factor, Mga Transcription factor, Mor Transcription factor, MtlR Transcription factor, NarL Transcription factor, NrdR Transcription factor, NtrC Transcription factor, OmpR Transcription factor, PadR Transcription factor, Prd Transcription factor, PrrA Transcription factor, PucR Transcription factor, PuR Transcription factor, Rok Transcription factor, Ros_MucR Transcription factor, RpiR Transcription factor, RpoD Transcription factor, RpoN Transcription factor, Rrf2 Transcription factor, RtcR Transcription factor, Sarp Transcription factor, SfsA Transcription factor, SinR Transcription factor, SorC Transcription factor, Spo0A Transcription factor, TetR Transcription factor, TrmB Transcription factor, TrpR Transcription factor, Unclassified Transcription factor, WhiB Transcription factor, Xre Transcription factor, YcbB Transcription factor, YesN Transcription factor, YesN Transcription factor, YcbB Transcription factor, Xre Transcription factor, WhiB Transcription factor, Unclassified Transcription factor, TrpR Transcription factor, TrmB Transcription factor, TetR Transcription factor, Spo0A Transcription factor, SorC Transcription factor, SinR Transcription factor, SfsA Transcription factor, Sarp Transcription factor, RtcR Transcription factor, Rrf2 Transcription factor, RpoN Transcription factor, RpoD Transcription factor, RpiR Transcription factor, Ros_MucR Transcription factor, Rok Transcription factor, PuR Transcription factor, PucR Transcription factor, PrrA Transcription factor, Prd Transcription factor, PadR Transcription factor, OmpR Transcription factor, NtrC Transcription factor, NrdR Transcription factor, NarL Transcription factor, MtlR Transcription factor, Mor Transcription factor, Mga Transcription factor, MetJ Transcription factor, MerR Transcription factor, MarR Transcription factor, LytTR Transcription factor, LysR Transcription factor, LuxR Transcription factor, Lsr2 Transcription factor, LexA Transcription factor, LacI Transcription factor, KorB Transcription factor, IclR Transcription factor, HxlR Transcription factor, HrcA Transcription factor, Hns Transcription factor, GutM Transcription factor, GntR Transcription factor, Fur Transcription factor, FlhD Transcription factor, FlhC Transcription factor, Fis Transcription factor, Fe_dep_repress Transcription factor, FeoC Transcription factor, FaeA Transcription factor, Ecf Transcription factor, DtxR Transcription factor, DnaA Transcription factor, DeoR Transcription factor, CtsR Transcription factor, CsoR Transcription factor, Crp Transcription factor, Crl Transcription factor, ComK Transcription factor, CodY Transcription factor, CitT Transcription factor, Bhl Transcription factor, BetR Transcription factor, AsnC Transcription factor, ArsR Transcription factor, ArgR Transcription factor, AraC Transcription factor, AlpA Transcription factor, AbrB Transcription factor, AbrB Transcription factor, AlpA Transcription factor, AraC Transcription factor, ArgR Transcription factor, ArsR Transcription factor, AsnC Transcription factor, BetR Transcription factor, Bhl Transcription factor, CitT Transcription factor, CodY Transcription factor, ComK Transcription factor, Crl Transcription factor, Crp Transcription factor, CsoR Transcription factor, CtsR Transcription factor, DeoR Transcription factor, DnaA Transcription factor, DtxR Transcription factor, Ecf Transcription factor, FaeA Transcription factor, FeoC Transcription factor, Fe_dep_repress Transcription factor, Fis Transcription factor, FlhC Transcription factor, FlhD Transcription factor, Fur Transcription factor, GntR Transcription factor, GutM Transcription factor, Hns Transcription factor, HrcA Transcription factor, HxlR Transcription factor, IclR Transcription factor, KorB Transcription factor, LacI Transcription factor, LexA Transcription factor, Lsr2 Transcription factor, LuxR Transcription factor, LysR Transcription factor, LytTR Transcription factor, MarR Transcription factor, MerR Transcription factor, MetJ Transcription factor, Mga Transcription factor, Mor Transcription factor, MtlR Transcription factor, NarL Transcription factor, NrdR Transcription factor, NtrC Transcription factor, OmpR Transcription factor, PadR Transcription factor, Prd Transcription factor, PrrA Transcription factor, PucR Transcription factor, PuR Transcription factor, Rok Transcription factor, Ros_MucR Transcription factor, RpiR Transcription factor, RpoD Transcription factor, RpoN Transcription factor, Rrf2 Transcription factor, RtcR Transcription factor, Sarp Transcription factor, SfsA Transcription factor, SinR Transcription factor, SorC Transcription factor, Spo0A Transcription factor, TetR Transcription factor, TrmB Transcription factor, TrpR Transcription factor, Unclassified Transcription factor, WhiB Transcription factor, Xre Transcription factor, YcbB Transcription factor, YesN Transcription factor, YesN Transcription factor, YcbB Transcription factor, Xre Transcription factor, WhiB Transcription factor, Unclassified Transcription factor, TrpR Transcription factor, TrmB Transcription factor, TetR Transcription factor, Spo0A Transcription factor, SorC Transcription factor, SinR Transcription factor, SfsA Transcription factor, Sarp Transcription factor, RtcR Transcription factor, Rrf2 Transcription factor, RpoN Transcription factor, RpoD Transcription factor, RpiR Transcription factor, Ros_MucR Transcription factor, Rok Transcription factor, PuR Transcription factor, PucR Transcription factor, PrrA Transcription factor, Prd Transcription factor, PadR Transcription factor, OmpR Transcription factor, NtrC Transcription factor, NrdR Transcription factor, NarL Transcription factor, MtlR Transcription factor, Mor Transcription factor, Mga Transcription factor, MetJ Transcription factor, MerR Transcription factor, MarR Transcription factor, LytTR Transcription factor, LysR Transcription factor, LuxR Transcription factor, Lsr2 Transcription factor, LexA Transcription factor, LacI Transcription factor, KorB Transcription factor, IclR Transcription factor, HxlR Transcription factor, HrcA Transcription factor, Hns Transcription factor, GutM Transcription factor, GntR Transcription factor, Fur Transcription factor, FlhD Transcription factor, FlhC Transcription factor, Fis Transcription factor, Fe_dep_repress Transcription factor, FeoC Transcription factor, FaeA Transcription factor, Ecf Transcription factor, DtxR Transcription factor, DnaA Transcription factor, DeoR Transcription factor, CtsR Transcription factor, CsoR Transcription factor, Crp Transcription factor, Crl Transcription factor, ComK Transcription factor, CodY Transcription factor, CitT Transcription factor, Bhl Transcription factor, BetR Transcription factor, AsnC Transcription factor, ArsR Transcription factor, ArgR Transcription factor, AraC Transcription factor, AlpA Transcription factor, AbrB

Transcription factors (TFs) are essential for the regulation of gene expression and are found in all living organisms. P2TF is an integrated and comprehensive database of TF proteins, which contains a compilation of the TF genes within completely sequenced genomes and metagenomes. It provides detailed annotation of each TF gene including classification, sequence features, functional domains, as well as chromosomal localization. Data can be downloaded for analysis and users can validate and add annotation to predicted TF genes.



The database can be browsed and searched with a user-friendly web interface.

Quick access

All TFs present in the database can be retrieved with:

  • Search for specific genome, gene or domain architecture search

  • Genome Browse for all refined TF annotation of each genome

  • Metagenome Browse for all refined TF annotation of each metagenome

  • Download menu for all TF predicted in Excel Files of each genome

A complete documentation and a How-To section are accessible via the Documentation menu.

For further details see the publication.

P2TF: a comprehensive resource for analysis of prokaryotic transcription factors
Ortet P, Whitworth DE, Barakat M.
BMC Genomics 2012, 13:628.
Abstract [ BMC ] [ PubMed ]  Full text [ PDF ] [ HTML ]
Please visit P2CS (Prokaryotic 2-Component Systems), a database of Two-Component System (TCS) signal transduction proteins, available at www.p2cs.org.

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Date : 19 September 2024, 16:35:13 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales